I have the lighter spring. Starting in a certain year Whipple moved to a lighter spring.Without a vacuum source the bypass won't open. He'll need to lock it open somehow.Malcolm went through something like this. You need the lighter bypass spring so you don't get surge. Although I don't remember if he was able to totally get rid of the surge. It had to do with the sudden rush of air.
I read Malcolm's post and he had idle problems with the heavier spring. When he went to the lighter spring idle was good but the transition to boost was causing symptoms exactly like what I'm having. His solution was to put a restrict (nitrous jet) in the vac line to the solenoid so the bypass wouldn't snap open. Since I don't have that option I'll try a spring on there to counteract the light spring pressure.
My Whipple instructions say the bypass is designed to open with only 1" of vacume.
Edit: I appreciate everyone's input so far!