I feel this test is great but also flawed. If the tune is set for the stock manifold, the other two the ported and boss intake were to be set for failure.
My feeling on reading it all is the ported intake flowed a bit more then stock so you could see the power difference. The boss IM flows a bit more then the ported stock IM, and you pass the perameters for the tune for the stock manifold, so the power was not as it should be for the boss intake. Does that make sense?
correct me if im wrong but when tuning for the Boss IM all they do is richin up the a/f a little. There really isn't all that much that goes into tuning those