I’m thinking at this point since my filter is dirty and I was thinking about swapping the intake, would it be safe to say swapping the intake, and getting a basic tune would be a safe place to start given the unknown situation?
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If it's not the stock upper, it's real close. It's not a 2.4". The fact that the plastic front part of the button that goes through the threaded hole in rotor shaft is damaged may be a clue that someone has tampered with it along the way. On the other hand it could have stayed stock its whole life. I'd load the SCT canned tune and see if your results are any different on the warning lights. Post the exact DCT codes you've found. Is the rough idle occurring when the "wrench" light is on? The engine will run pretty crappy in limp mode.
I've always been led to believe the wrench light is triggered by a hiccup in the throttle body/drive by wire system. It could be tune related and it could be a mechanical issue. If you could find someone with a good throttle body to swap, I'd give that a shot, if the SCT tune doesn't do anything.
You have two electrical connectors on the throttle body. Why don't you try unplugging and plugging those connectors back in and see if it does anything. It's grabbing at straws, but it's easy to do.
You need an IDS tool to read those codes. They are big money though so in your case it would be cheaper to have the local dealer pull the codes and tell you what the wrench is on for.
Think I Would be able to read it with FORScan hooked up to my laptop?
I fortunately/unfortunately work a really busy schedule and my local dealer sucks
Not sure if this was discussed ...since there's possibility wrench light being related to the drive train but was the OBD flashed for the new clutch? Necessary on the '14's . My original clutch went on my '13 at 4500 miles....shortly after I bought it. I can only assume the female original owner may have been trying to do burnouts with the TC on which could've damaged the clutch. The clutch was not covered under factory or used car warranty but the dealer offered me 20% discount on a factory clutch replacement labor + parts. I knew I wanted HP Upgrades so I chose to go for broke ($) at a Mustang shop with a stronger aftermarket clutch .
I also agree with the advice to do a compression test and even swapping in fresh spark plugs right away. WORTH IT. If...God Forbid....there is a compression issue THAT should be covered under terms of a used car dealer warranty.
I also vote not to do any CAI or TB or HP upgrades until you're assured all is well across the board. There will be plenty of advice down the road here on the forum for CAI / TB / Plenum / Upper or Lower Pulley Upgrades. One thing for sure we all love to help a guys spend his money !
Regarding the Upper Pulley.....if your compression is good, new plugs, clutch flashed in, TB connects all good, ALL wrench light issues resolved I'd ignore the upper pulley for now. Just break in the new clutch and start planning mods. Oh.... But Wait ->) ! If all is well..... Why not do Gears now ? You're already in clutch break inn period. Break gears & clutch in together. This way you're not going thru two break in periods back to back......Uugh.
BTW......CONGRATS!